>DL; T.gondii
Toxoplasma gondii
---------CUGCARAYUGAUUUAAAGAUUAAAU---UUUAUACGAAUGGAUUAAAAUGGUC------UUUA-CU
ACAUAAUUUGCGCACA------CCU---------GUGUC--------UUCC------GCCGAA-C-GGA-----U
UCG------CGGAAAUUUAAUAGGACUGAGAAACGAUAAGGCAGCGCAAAGAUUCGUAGAAAUAAUUCGAAUGAG
GAAUCCAAACCCCUUUGAGUAACAAAAGUUGCCAGCAGCGGUAAUUUAAAGUUGUUAAAAAGGAUUUCU--UCAG
---AUC---CA----------------UUCAUU---------------------UCUUUGAAAAUU---UGUCAA
GGA-G-UU---UCUUAAUGAUUUUGUGAAAAACUACUGAAAAUUGAAAAUCAGAUACCAUAAACUAUU--UGCUU
AUGAAAAAAUGGCAAAAA-UCCACCAUUAAACUCAACAGAAACUCACAGAUUGAUAGCGGUAGGUGAUUAAUUUU
AACGGAGACA---------UUCG----UGACUGUCUAGGAAGUUGCUAGAUGCUACUUU-------UAUAAGAUA
UAAUGUGAUGGGGAUUUGCAAUUAUUCAACGAGGAUAGUAUCAGCAGGAUUACGUCCCCACCGCCCGUCGC----
--GUUC---------GAAGUCGUAACAAGGUGAAGAUCAUKCA------------*
>DL; N.caninum
Neospora caninum
--------------???????UUAAAGAUUAAAU---UUUAUACGAAUGGAUUAAAAUGGUC------UUUA-CU
ACAUAAUUUGCGCACA------UCU---------GUGUC--------UUCC------GCCGAA-C-GGA-----U
UCG------CGGAAAUUUAAUAGGACUGAGAAACGAUAAGGCAGCGCAAAGAUUCGUAGAAAUAAUUCGAAUGAG
GAAUCCAAACCCCUUUGAGUAACAAAAGUUGCCAGCAGCGGUAAUUUAAAGUUGUUAAAAAGGAUUUCU--UCAG
---AUC---CA----------------UUCAUU---------------------UCUUUGAAAAUU---UGUCAA
GGA-G-UU---UCUUAAUGAUUUUGUGAAAAACUACUGAAAAUUGAAAAUCAGAUACCAUAAACUAUU--UGCUU
AUGAAAAAAUGGCAAAAA-UCCACCAUUAAACUCAACAGAAACUCACAGAUUGAUAGCGGUAGGUGAUUAAUUUU
AACGGAGACA---------UUCG----UGACUGUCUAGGAAGUUGCUAGAUGCUACUUU-------UAUAAGAUA
UAAUGUGAUGGGGAUUUGCAAUUAUUCAACGAGGAUAGUAUCAGCAGGAUUACGUCCCCACCGCCCGUCGC----
--GUUC---------GAAGUCGUAACAAGGUGAAGAUCAUUC-------------*
>DL; S.neurona
Sarcocystis neurona
--------------AACUGAUUUAAAGAUUAAAU---UUUAUACGAAUGGAUUAAAAUGGUC------UUUA-CU
ACAUAAUUUGCGCACA------CUCG-------UGUGUC--------UUCG------GCCGAA-C-GGAC----U
UUU-----GUGGAAAUUUAAUAGGACUGAGAAACGAUAAGGCAGCGCAAAGACUCGUAGAAAUAAUAUGAAUGAG
GAAUCCAAACCCCUUUGAGUAACAAAAGUUGCCAGCAGCGGUAAUUUAAAGUUGUUAAAAAGGAUAUCU--UUUG
U--AUC---CU--------------UGUUCAUU--CU-----------------GCCGUGAAAAUU---UGUUAA
GGA-G-UU---UCUUAAUGAUUUUGUGAAAAACUACUGAAAAUUGAAAAUCAGAUACCAUAAACUAUU--UCCUU
AUGAAAAAAUGGCAAAAA-UCCACCAUUAAACUCAACAGAAACUCACAGAUUGAUAGCGGUAGGUGAUUAAUUUU
AACGGAGACA---------UUUG----UGACUGUCUAGGAAGUUGCUAGAUGCUACUUU-------UACAAGACA
UAAUGUGAUGGGGAUUUGCAAUUAUUCAACGAGGAUAGUAUCAGCAGGAUUACGUCCCCACCGCCCGUCGCG---
--UACC--------CGAAGUCGUAACAAGGUGAAGAUCA???-------------*
>DL; S.muris
Sarcocystis muris
--------------AACUGAUUUAAAGAUUAAAU---UUUAUACGAAUGGAUUAAAAUGGUC------AUUA-CU
ACAUAAUUUGCGCACA------CUCG-------UGUGUC--------UUCG------GCCGAA-C-GGAC----U
UUA----UGUAGAAAUUUAAUAGGACUGAGAAACGAUAAGGCAGCGCAAAGACUCGUAGAAAUAAUCAGAAUGAG
GAAUCCAAACCCCUUUGAGUAACAAAAGUUGCCAGCAGCGGUAAUUUAAAGUUGUUAAAAAGGAUAUCUU-UCCG
---AUC---CU---------------UUUCAUU--CU-----------------ACCGUGAAAAUU---UAUUAA
GGA-G-UU---UCUUAAUGAUUUUGUGAAAAACUACUGAAAAUUGAAAAUCAGAUACCAUAAACUAUU--UCCUU
AUGAAAAAAUGGCAAAAA-UCCACCAUUAAACUCAACAGAAACUCACAGAUUGAUAGCGGUAGGUGAUUAAUUUU
AACGGAGACA---------CUCG----CGACUGUCUAGGAAGUUGCUAGAUGCUACUUU------UAUGAAGACA
UAAUGUGAUGGGGAUUUGCAAUUAUUCAACGAGGAUAGUAUCAGCAGGAUUACGUCCCCACCGCCCGUCGCG---
---UUU--------CGAAGUCGUAACAAGGUGAAGAUCAAGC-------------*
>DL; S.arieticanis
Sarcocystis arieticanis
--------------???????UUAAAGAUUAAAUUC-UUUAUACGAAUGGAUUAAAAUAGUCAUAUCGGAGAACU
ACAUAAUUUGCGCAAA------GCAA--------GUGUCAUCUGUGUUUAACACACAGCCGAAUCUGGACAUU-U
UCA---AUGUAGAAAUUUAAUAGGACUGAGAAACGAUAAGGCAGCGCAAAGACUCGUAGAAAUAAUUUGAAUGAG
GAAUUUAAACCCCUUUGAGUAACAAAAGUUGCCAGCAGCGGUAAUUUAAAGUUGUUAAAAAGGAUGUCUUAUUUG
U-AAUC--UCGA-------UAAUGGUGUUCUCCUCUCAGUUU-----------UCCUGUGAAAAUU---AAUUAA
GGA-GCUU---UCUUAAUGAUUUUGUGAAAAACUACUGAAAAUUGAAAAUCAGAUACCAUAAACUAUUUUUUGCU
AUGAAAAAAUGGCAAAAACUCCACCAUUAAACUCAACA-AAACUCACAGAUUGAUAGCGGUAGGUGAUUAAUUUU
AACGGAGACAACU------UUAU--UGUGACUGUCUAGGAAGUUGCUAGAUGCUACUUU----GUUGAAAAGAUA
UAAUGUGAUGGGGAUUUGCAAUUAUUCAACGAGGAUAGUAUCAGCAGGAUUACGUCCCCACCGCCCGUCGCGCC-
--GUUU----CAGGCGAAG???????????????????????-------------*
>DL; S.capracanis
Sarcocystis capracanis
--------------??????UUUAAAGAUUAAAUU--UUUAUACGAAUGGAUUAAAAUAGUCAUCU-GGAAAACU
ACAUAAUUUGCGCAAA------GCAA--------GUGUCAGUG----UCAA--AACUGCCGAA-C-GGACAUU-U
UCA---AUGUAGAAAUUUAAUAGGACUGAGAAACGAUAAGGCAGCGCAAAGACUCGUAGAAAUAAUUUGAAUGAG
GAAUUUAAACCCCUUUGAGUAACAAAAGUUGCCAGCAGCGGUAAUUUAAAGUUGUUAAAAAGGAUGUCUUAUUUG
U-AAUU--UUAAUGAUG--UAGCGGGGUGAAAG--UCCG----------AUUAUUCUGUGAAAAUU---AAUUAA
GGA-G-UU---UCUUAAUGAUUUUGUGAAAAACUACUGAAAAUUGAAAAUCAGAUACCAUAAACUAUUUUUUGCU
AUGAAAAAAUGGCAAAAA-UCCACCAUUAAACUCAACAGAAACUCACAGAUUGAUAGCGGUAGGUGAUUAAUUUU
AACGGAGACAACU------UUAU--UGUGACUGUCUAGGAAGUUGCUAGAUGCUACUUU----GUUGAAAAGAUA
UAAUGUGAUGGGGAUUUGCAAUUAUUCAACGAGGAUAGUAUCAGCAGGAUUACGUCCCCACCGCCCGUCGCCCG-
--GCAA------CGCGAAGUCGUAACA-GGUGAA????????-------------*
>DL; S.tenella
Sarcocystis tenella
--------------???????UUAAAGAUUAAAUU--UUUAUACGAAUGGAUUAAAAUAGUCAUCU-GGAAAACU
ACAUAAUUUGCGCAAAC-----GCAA--------GUGUCAGU-----GUCA-CAGCUGCCGAA-C-GGACAUUCU
UUUGUAAUGUAGAAAUUUAAUAGGACUGAGAAACGAUAAGGCAGCGCAAAGACUCGUAGAAAUAAUUUGAAUGAG
GAAUUUAAACCCCUUUGAGUAACAAAAGUUGCCAGCAGCGGUAAUUUAAAGUUGUUAAAAAGGAUGUCUUAUUUG
U-AAUU---UA--------------UGCAAGC?---------------------ACUG-GAAA-U----UAAUAA
GGA-G-UU---UCUUAAUGAUUUUGUGAAAAACUACUGAAAAUUGAAAAUCAGAUACCAUAAACUAUUUUUUGCU
AUGAAAAAAUGGCAAAAA-UCCACCAUUAAACUCAACAGAAACUCACAGAUUGAUAGCGGUAGGUGAUUAAUUUU
AACGGAGACAACU------UUAU--UGUGACUGUCUAGGAAGUUGCUAGAUGCUACUUU-----GUUGAAAGAUA
UAAUGUGAUGG-GAUUUGCAAUUAUUCAAC-AGGAUAGUAUCAGCAGGAUUACGUCCCCACCGCC?GU?GCGCG-
--GCAA------CGCGAAGUCGUAACAAGG????????????-------------*
>DL; S.cruzi
Sarcocystis cruzi
--------------???????UUAAAGAUUAAAU---UUUAUACGAAUGGAUUAAAAUAGUCAUAU-CGAAAACU
ACAUAAUUUGCGCAAA------GCAA--------GUGUCAUCUGUU-AACAGCAGGUGCCGAA-C-GGACAUU-U
UAU---AUGUAGAAAUUUAAUAGGACUGAGAAACGAUAAGGCAGCGCAAAGACUCGUAGAAAUAAUUUGAAUGAG
GAAUUUAAACCCCUUUGAGUAACAAAAGUUGCCAGCAGCGGUAAUUUAAAGUUGUUAAAAAGGAUGUCUUAUUUG
U-AAUC--UAAAUAUA----------ACCU-----UA-----------UAUUGGGCCGUGAAAAUU---AAUUAA
GGA-G-UU---UCUUAAUGAUUUUGUGAAAAACUACUGAAAAUUGAAAAUCAGAUACCAUAAACUAUUUUUUUCU
AUGAAAAAAUGGCAAAAA-UCCACCAUUAAACUCAACAGAAACUCACAGAUUGAUAGCGGUAGGUGAUUAAUUUU
AACGGAGACAACU------UUAU--UGUGACUGUCUAGGAAGUUGCUAGAUGCUACUUU----GUUGAAAAGAUA
UAAUGUGAUGGGGAUUUGCAAUUAUUCAACGAGGAUAGUAUCAGCAGGAUUACGUCCCCACCGCCCGUCGCGCG-
--GCAA------CGCGAAGUCGUAACAA-G????????????-------------*
>DL; S.buffalonis
Sarcocystis buffalonis
--------------?ACUGAUUUAAAGAUUAAAU---UUUAUACGAAUGGAUUAAAAUAGUCAAUAA-UAUA-CU
ACAUAAUUUGCGCAAAGUCACUUUACGGUGG---GUGUCU-------GUAA---AGGGCCGAA-C-GGACAU--U
UCG---GUGUAGAAAUUUAAUAGGACUGAGAAACGAUAAGGCAGCGCAAAGACUCGUAGAAAUAAUCAGAAUGAG
GAAUCCAAACCCCUUUGAGUAACAAAAGUUGCCAGCAGCGGUAAUUUAAAGUUGUUAAAAAGGAUAUCUUUUUAG
UGAAUGAUCAUAAUAAUA---------UUGAUU--UUA---------CUAUUGGGCAGUGAAAAUUUAUUGUUAA
GGA-G-UU---UCUUAAUGAUUUUGUGAAAAACUACUGAAAAUUGAAAAUCAGAUACCAUAAACUAUU--CUGUU
AUGAAAAAAUGGCAAAAA-UCCACCAUUAAACUCAACAGAAACUCACAGAUUGAUAGCGGUAGGUGAUUAAUUUU
AACGGAGACAACAGU----UUUA--UGUGACUGUCUAGGAAGUUGCUAGAUGCUACUUU----GUUUAAAAGAUA
UAAUGUGAUGGGGAUUUGCAAUUAUUCAACGAGGAUAGUAUCAGCAGGAUUACGUCCCCACCGCCCGUCGCGAUU
GUGUAA-CAGCAAUCGAAGUCGUAACAAGGUGAAGAUCAAGCUUGGAUCCCGGG-*
>DL; S.hirsuta
Sarcocystis hirsuta
--------------?ACUGAUUUAAAGAUUAAAU---UUUAUACGAAUGGAUUAAAAUAGUCAAUAA-UAUA-CU
ACAUAAUUUGCGCAAAGUCACUUAACGGUGGAUGGUGUCU-----CCUUAA---AAGGCCGAA-C-GGACAU--U
UCG---GUGUAGAAAUUUAAUAGGACUGAGAAACGAUAAGGCAGCGCAAAGACUCGUAGAAAUAAUCAGAAUGAG
GAAUCCAAACCCCUUUGAGUAACAAAAGUUGCCAGCAGCGGUAAUUUAAAGUUGUUAAAAAGGAUAUCUUUCUAA
UGAAUGAUCAUAAUAAUA---------UUGAUU--UUA---------CUAUUGGGCAGUGAAAAUUUAUUGUCAA
GGA-G-UU---UCUUAAUGAUUUUGUGAAAAACUACUGAAAAUUGAAAAUCAGAUACCAUAAACUAUU--CUGUU
AUGAAAAAAUGGCAAAAA-UCCACCAUUAAACUCAACAGAAACUCACAGAUUGAUAGCGGUAGGUGAUUAAUUUU
AACGGAGACAACAGU----UUUA--UGUGACUGUCUAGGAAGUUGCUAGAUGCUACUUU----GUUUAAAAGAUA
UAAUGUGAUGGGGAUUUGCAAUUAUUCAACGAGGAUAGUAUCAGCAGGAUUACGUCCCCACCGCCCGUCGCGAUU
GUGUAA-CAGCAAUCGAAGUCGUAACAAGGUGAAGAUCA???-------------*
>DL; S.fusiformis
Sarcocystis fusiformis
--------------?ACUGAUUUAAAGAUUAAAUUUUAUUAUACGAAUGGAUUAAAAUAGUCAAUAU-AAUA-CU
ACAUAAUUUGCGCAAAC------UCG--------GUGUCUUU-----UUUA---AAGGCCGAA-C-GGACAU--U
UCG---AUGUAGAAAUUUAAUAGGACUGAGAAACGAUAAGGCAGCGCAAAGACUCGUAGAAAUAAUCUGAAUGAG
GAAUCCAAACCCCUUUGAGUAACAAAAGUUGCCAGCAGCGGUAAUUUAAAGUUGUUAAAAAGGAUAUCUUUUUAG
UGAAUGAUUACACUAAUAA------UAAUAAUU--UAAUAAUUUUGGUAAGACAA--GUGAAAAUU---UGUUAA
GGA-G-UU---UCUUAAUGAUUUUGUGAAAAACUACUGAAAAUUGAAAAUCAGAUACCAUAAACUAUU--CUGUU
AUGAAAAAAUGGCAAAAA-UCCACCAUUAAACUCAACAGAAACUCACAGAUUGAUAGCGGUAGGUGAUUAAUUUU
AACGGAGACAACUUUU---AUUA--UGUGACUGUCUAGGAAGUUGCUAGAUGCUACUUU----GUUUAAGAGAUA
UAAUGUGAUGGGGAUUUGCAAUUAUUCAACGAGGAUAGUAUCAGCAGGAUUACGUCCCCACCGCCCGUCGCGUUG
U-GUACACAGCAAUG???????????????????????????-------------*
>DL; S.gigantea
Sarcocystis gigantea
--------------???????UUAAAGAUUAAAU---UUUAUACGAAUGGAUUAAAAUAGUCGAUU--UUUA-CU
ACAUAAUUUGCGCAAACAUAUUUAUU-AUG----GUGUCAUCACU--UUCUAGUGGUGCCGAA-CCGGACAU--U
UCG---GUGUAGAAAUUUAAUAGGACUGAGAAACGAUAAGGCAGCGCAAAGACUCGUAGAAAUAAUGUGAAUGAG
GAAUCCAAACCCCUUUGAGUAACAAAAGUUGCCAGCAGCGGUAAUUUAAAGUUGUUAAAAAGGAUAUCUUUUUCG
UAAAUGA-UUUAAUAAUAA----UAUAUUGU----UAUUUA------UUAUUAUGCAGUGAA---UU--UGUUAA
GGAUG-UUUUUUCUUAAUGAUUUUGUGAAAAACUACUGAAAAUUGAAAAUCAGAUACCAUAAACUAUUCAUUGUU
AUGAAAAAAUGGCAAAAA-UCCACCAUUAAACUCAACAGAAACUCACAGAUUGAUAGCGGUAGGUGAUUAAUUUU
AACGGAGACAACAAU----UUUU--UGUGACUGUCUAGGAAGUUGCUAGAUGCUACUUU-GUAUUAUAAGAGAUA
UAAUGUGAUGGGGAUUUGCAAUUAUUCAACGAGGAUAGUAUCAGCAGGAUUACGUCCCCACCGCCCGUCGCGGUU
C-CUUU--UUGGGCCGAA????????????????????????-------------*
>DL; S.moulei
Sarcocystis moulei
--------------???????UUAAAGAUUAAAU---UUUAUACGAAUGGAUUAAAAUAGUCGAUU--UUUA-CU
ACAUAAUUUGCGCAAACAUAUUUAUUGAUG----GUGUCAUCACU--UUUUAGUGGUGCCGAA-CCGGACAU--U
UCG---GUGUAGAAAUUUAAUAGGACUGAGAAACGAUAAGGCAGCGCAAAGACUCGUAGAAAUAAUGUGAAUGAG
GAAUCCAAACCCCUUUGAGUAACAAAAGUUGCCAGCAGCGGUAAUUUAAAGUUGUUAAAAAGGAUAUCUUUUUCG
UAAAUGA-UUUGAUAAUAUAUAAUGUAUUGACU--UAUCAU------UAUUAUGGCAGUGAAAAUUU-UUGUUAA
GGAUG-UUUUUUCUUAAUGAUUUUGUGAAAAACUACUGAAAAUUGAAAAUCAGAUACCAUAAACUAUUCAUUGUU
AUGAAAAAAUGGCAAAAA-UCCACCAUUAAACUCAACAGAAACUCACAGAUUGAUAGCGGUAGGUGAUUAAUUUU
AACGGAGACAACAUU----UUUA--UGUGACUGUCUAGGAAGUUGCUAGAUGCUACUUUGUCUUAAUAAGAGAUA
UAAUGUGAUGGGGAUUUGCAAUUAUUCAACGAGGAUAGUAUCAGCAGGAUUACGUCCCCACCGCCCGUCGCGGUU
C-CUUU--UUGGGCCGAAGU??????????????????????-------------*
>DL; S.aucheniae
Sarcocystis aucheniae
--------------AACUGAUUUAAAGAUUAAAUU--UUUAUACGAAUGGAUUAAAAUAGUGAA----AUUA-CU
ACAUAAUUUGCGCAAAC----UUUAU------UGGUGUUCGUU----UUCC---AACGCCGAA-C-GGACAU-CA
UUUUGUAUGUAGAAAUUUAAUAGGACUGAGAAACGAUAAGGCAGCGCAAAGACUCGUAGAAAUAAUUUGAAUGAG
GAAUCCAAACCCCUUUGAGUAACAAAAGUUGCCAGCAGCGGUAAUUUAAAGUUGUUAAAAAGGAUUUCUUUUUUG
AAAAUA---UC--------UUUUCAUAAGUAAU--UGGGAGA-------------CUGUGAAAAUU---UAUUAA
GGA-G-UU---UUUUAAUGAUUUUGUGAAAAACUACUGAAAAUUGAAAAUCAGAUACCAUAAACUAUUAUUUAAU
AUGAAAAAAUGGCAAAAA-UCCACCAUUAAACUCAACAGAAACUCACAGAUUGAUAGCGGUAGGUGAUUAAUUUU
AACGGAGACAAUUACUACUUUCGGGUAGGACUGUCUAGGAAGUUGCUAGAUGCUACUUU----GUUCAAAAGAGA
UAAUGUGAUGGGGAUUUGCAAUUAUUUAACGAGGAUAGUAUCAGCAGGAUUACGUCCCCACCGCCCGUCGCA---
--AGUA------UGGGAAGUCGUAACAAGGUGAAGAUCA???-------------*
>DL; S.sp.
Sarcocystis species
GAAUUCCAGCUGCAGAUUGAUUUAAAGAUUAAAU---UUUAUACGAAUGGAUUAAAAUGGUC------UUUA-CU
ACAUAAUUUGCGCACAG---UUUUUU--GAC---GUGUC--------UUGA----UUGCCGAA-C-GGACUUU-U
AUU---AGGUGGAAAUUUAAUAGGACUGAGAAACGAUAAGGCAGCGCAAAGACUCGUAGAAAUAAUUGGAAUGAG
GAAUCCAAACCCCUUUGAAUAACAAAAGUUGCCAGCAGCGGUAAUUUAAAGUUGUUAAAAAGGAUUUCUUAUUAU
U--AUU--UUU-UGGUGUUUUUUUUUUAUCAAUUUAGAAGAAGACAG-----CGACUGUGAAAAUU---UGUGAA
GGA-G-UU---UCUUAAUGAUUUUGUGAAAAACUACUGAAAAUUGAAAAUCAGAUACCAUAAACUAUU--UCCUU
AUGAAAAAAUGGCAAAAA-UCCACCAUUAAACUCAACAGAAACUCACAGAUUGAUAGCGGUAGGUGAUUAAUUUU
AACGGAGACAACU------AUUU-UUGUGACUGUCUAGGAAGUUGCUAGAUGCUACUUU-------UAUAAGAGA
UAAUGUGAUGGGGAUUUGCAAUUAUUCAACGAGGAUAGUAUCAUCAGGAUUACGUCCCCACCGCCCGUCGCGAG-
--UUUU------CUCGAAGUCGUAACAAGGUGAAGAUCCUGCAGCGGAAGCUUGG*